FabSim3 Literature¶

This page serves to provide definitive references for key aspects of the FabSim3 automation toolkit. A full list of relevant FabSim3 papers can be found here.

FabSim 3 paper¶

Groen, D., Arabnejad, H., Suleimenova, D., Edeling, W., Raffin, E., Xue, Y., Bronik, K., Monnier, N. and Coveney, P.V., 2023. FabSim3: An automation toolkit for verified simulations using high performance computing. Computer Physics Communications, 283, p.108596.

@article{groen2023fabsim3,
  title={FabSim3: An automation toolkit for verified simulations using high performance computing},
  author={Groen, Derek and Arabnejad, Hamid and Suleimenova, Diana and Edeling, Wouter and Raffin, Erwan and Xue, Yani and Bronik, Kevin and Monnier, Nicolas and Coveney, Peter V},
  journal={Computer Physics Communications},
  volume={283},
  pages={108596},
  year={2023},
  publisher={Elsevier}
}

SEAVEA toolkit paper¶

At time of writing there is no SEAVEA toolkit paper yet. Please refer either to the paper for the relevant component (e.g. FabSim3) or the VECMA toolkit paper below.

Note

There is no such thing as FabSim2. We chose to name the sequel of FabSim `FabSim3`, because it was modified to work with Python 3 (among many other things).

Original FabSim paper (Python 2 version)¶

Groen, D., Bhati, A.P., Suter, J., Hetherington, J., Zasada, S.J. and Coveney, P.V., 2016. FabSim: facilitating computational research through automation on large-scale and distributed e-infrastructures. Computer Physics Communications, 207, pp.375-385.

@article{groen2016fabsim,
  title={FabSim: facilitating computational research through automation on large-scale and distributed e-infrastructures},
  author={Groen, Derek and Bhati, Agastya P and Suter, James and Hetherington, James and Zasada, Stefan J and Coveney, Peter V},
  journal={Computer Physics Communications},
  volume={207},
  pages={375--385},
  year={2016},
  publisher={Elsevier}
}

Overall VECMA toolkit paper¶

Groen, D., Arabnejad, H., Jancauskas, V., Edeling, W.N., Jansson, F., Richardson, R.A., Lakhlili, J., Veen, L., Bosak, B., Kopta, P. and Wright, D.W., 2021. VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations. Philosophical Transactions of the Royal Society A, 379(2197), p.20200221.

@article{groen2021vecmatk,
  title={VECMAtk: a scalable verification, validation and uncertainty quantification toolkit for scientific simulations},
  author={Groen, Derek and Arabnejad, Hamid and Jancauskas, Vytautas and Edeling, WN and Jansson, Fredrik and Richardson, Robin A and Lakhlili, Jalal and Veen, L and Bosak, Bartosz and Kopta, Piotr and others},
  journal={Philosophical Transactions of the Royal Society A},
  volume={379},
  number={2197},
  pages={20200221},
  year={2021},
  publisher={The Royal Society Publishing}
}